| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/0.5.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/0.5.3.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/0.5.3.0 |
| umi_tools_whitelist |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| umi_tools | 0.5.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
method: reads prime3: True bc_pattern: CCCCCCCCNNNNNNNN input_type|type: single input_type|input_single: t_R2.fastq.gz |
attributes: name attributes: name attributes: name |
t_R2.fastq.gz name |
| Test-2 |
input_type|type: paired log: True celloptions|expect_cells: 5 method: reads celloptions|use_cell_opts: advanced bc_pattern: CCCNNNNNNNNXXXXX input_type|barcode|barcode_select: first_read_only input_type|input_read1: t_R1.fastq.gz prime3: False celloptions|error_correct_thresh: 3 input_type|input_read2: t_R2.fastq.gz |
attributes: name attributes: name attributes: name attributes: name |
t_R1.fastq.gz t_R2.fastq.gz name |
| Test-3 |
input_type|type: paired_collection log: True celloptions|expect_cells: 5 celloptions|use_cell_opts: advanced input_type|input_readpair: paired collection bc_pattern: CCCNNNNNNNNXXXXX input_type|barcode|barcode_select: first_read_only prime3: False celloptions|error_correct_thresh: 3 method: reads |
attributes: name attributes: name attributes: name attributes: name |
t_R1.fastq.gz t_R2.fastq.gz name |