| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/1.1.2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/1.1.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/0.5.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/0.5.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/0.5.3.0 |
| umi_tools_whitelist |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| umi_tools | 1.1.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_type_cond|input_read1: t_R2.fastq.gz input_type_cond|bc_pattern: CCCCCCCCNNNNNNNN input_type_cond|input_type: single extract_method_cond|prime3: True method: reads knee_method: density |
name: value name: value name: value |
t_R2.fastq.gz value |
| Test-2 |
input_type_cond|input_read1: t_R1.fastq.gz input_type_cond|input_read2: t_R2.fastq.gz input_type_cond|bc_pattern: CCCNNNNNNNNXXXXX input_type_cond|input_type: paired extract_method_cond|prime3: False method: reads knee_method: density celloptions|expect_cells: 5 celloptions|error_correct_threshold: 3 celloptions|use_cell_opts: advanced log: True |
name: value name: value name: value name: value |
t_R1.fastq.gz t_R2.fastq.gz value |
| Test-3 |
input_type_cond|input_readpair: paired collection input_type_cond|bc_pattern: CCCNNNNNNNNXXXXX input_type_cond|input_type: paired_collection extract_method_cond|prime3: False method: reads knee_method: density celloptions|expect_cells: 5 celloptions|error_correct_threshold: 3 celloptions|use_cell_opts: advanced log: True |
name: value name: value name: value name: value |
t_R1.fastq.gz t_R2.fastq.gz value |
| Test-4 |
input_type_cond|input_read1: testYYY.40k.fastq.gz input_type_cond|bc_pattern: (?P<cell_1>.{8,10})(?P<discard_1>ACTGGCCTGCGA){s<=3}(?P<cell_2>.{9})(?P<discard_2>GGTAGCGGTGACA){s<=3}(?P<cell_3>.{9})(?P<umi_1>.{8})T{3}.* input_type_cond|input_type: single extract_method_cond|filtered_out_bool: True extract_method_cond|extract_method: regex method: umis knee_method: density |
name: value name: value name: value name: value |
testYYY.40k.fastq.gz value |