Repository revision
4:23939bfeee92

Repository 'scanpy_find_markers'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers

Scanpy FindMarkers tool metadata
Miscellaneous
to find differentially expressed genes between groups
scanpy_find_markers
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy1
1.4.3+galaxy1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy6
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.2+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.3.2+galaxy1
scanpy_find_markers
Requirements (dependencies defined in the <requirements> tag set)
name version type
scanpy-scripts 0.2.6 package
Functional tests
name inputs outputs required files
Test-1 input_format: anndata
settings|method: t-test_overestim_var
output_format: anndata
n_genes: 50
output_markers: False
input_obj_file: find_cluster.h5
settings|rankby_abs: False
settings|default: False
groupby: louvain
attributes: name
find_cluster.h5
name