| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.8.1+galaxy93 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.8.1+galaxy91 (this tool) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.8.1+galaxy9 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.8.1+3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.8.1+2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.8.1+2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.8.1+1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.8.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.7.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy4 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy10 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy9 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy8 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy6 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.3.2+galaxy1 |
| scanpy_find_markers |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| scanpy-scripts | 1.1.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_obj_file: louvain_1.0 input_format: anndata output_format: anndata output_markers: True n_genes: 50 groupby: INPUT_OBJ settings|key_added: GROUPBY_marker settings|method: t-test_overestim_var settings|rankby_abs: False settings|default: False |
name: value name: value |
louvain_1.0 value |
| Test-2 |
input_obj_file: louvain_1.0 input_format: anndata output_format: no_matrix_output output_markers: True n_genes: 50 groupby_file: groupby.txt settings|key_added: GROUPBY_marker settings|method: t-test_overestim_var settings|rankby_abs: False settings|default: False |
name: value |
louvain_1.0 groupby.txt value |
| Test-3 |
input_obj_file: mnn.h5 input_format: anndata output_markers: True n_genes: 50 groupby: louvain settings|key_added: l_markers settings|method: wilcoxon settings|layer: mnn settings|default: False |
name: value |
mnn.h5 value |