Repository revision
0:7004279ff8b7

Repository 'spades_coronaspades'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/spades_coronaspades

coronaSPAdes tool metadata
Miscellaneous
coronaSPAdes
SARS-CoV-2 de novo genome assembler
spades_coronaspades
toolshed.g2.bx.psu.edu/repos/iuc/spades_coronaspades/spades_coronaspades/3.15.3+galaxy0
3.15.3+galaxy0
spades.py --version 2>&1 | awk -F 'v' '{print $2}'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/spades_coronaspades/spades_coronaspades/3.15.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/spades_coronaspades/spades_coronaspades/3.15.3+galaxy0 (this tool)
spades_coronaspades
Requirements (dependencies defined in the <requirements> tag set)
name version type
spades 3.15.3 package
zip 3.0 package
Functional tests
name inputs outputs required files
Test-1 singlePaired|input1: covid.fastq.gz
singlePaired|sPaired: single
name: value
name: value
name: value
name: value
covid.fastq.gz
value
Test-2 singlePaired|input1: covid.fastq.gz
singlePaired|sPaired: single
arf|nanopore: covid.fastq.gz
arf|pacbio: covid.fastq.gz
arf|sanger: covid.fastq.gz
name: value
name: value
name: value
name: value
covid.fastq.gz
value