Repository revision
7:b28e8ed99424

Repository 'hmmer_nhmmer'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hmmer_nhmmer

nhmmer tool metadata
Miscellaneous
nhmmer
search a DNA model or alignment against a DNA database (BLASTN-like)
hmmer_nhmmer
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_nhmmer/hmmer_nhmmer/3.3.2+galaxy0
3.3.2+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_nhmmer/hmmer_nhmmer/3.3.2+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_nhmmer/hmmer_nhmmer/3.3.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_nhmmer/hmmer_nhmmer/3.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_nhmmer/hmmer_nhmmer/3.3
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_nhmmer/hmmer_nhmmer/3.2
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_nhmmer/hmmer_nhmmer/3.1b2
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_nhmmer/hmmer_nhmmer/0.1.0
hmmer_nhmmer
Requirements (dependencies defined in the <requirements> tag set)
name version type
hmmer 3.3.2 package
Functional tests
name inputs outputs required files
Test-1 hmmfile: MADE1.hmm
seqfile: dna_target.fa
oformat: ['tblout', 'dfamtblout', 'aliscoresout']
notextw: True
seed: 4
name: value
name: value
name: value
name: value
MADE1.hmm
dna_target.fa
value
Test-2 hmmfile: MADE1.hmm
seqfile: dna_target.fa
oformat:
notextw: True
seed: 4
name: value
MADE1.hmm
dna_target.fa
value