| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/trinotate/trinotate/3.2.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinotate/trinotate/3.2.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/trinotate/trinotate/3.1.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinotate/trinotate/3.0.1.0 |
| trinotate |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| trinotate | 3.2.1 | package |
| gnu-wget | 1.18 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
transdecoder: Trinity.fasta.transdecoder.pep blastx: swissprot.blastx.outfmt6 gene_trans_map: Trinity.fasta.gene_to_trans_map hmmscan: TrinotatePFAM.out blastp: swissprot.blastp.outfmt6 signalp: signalp.out tmhmm: tmhmm.out trinity: Trinity.fasta |
attributes: name |
Trinity.fasta Trinity.fasta.transdecoder.pep Trinity.fasta.gene_to_trans_map swissprot.blastp.outfmt6 swissprot.blastx.outfmt6 TrinotatePFAM.out tmhmm.out signalp.out name |
| Test-2 |
report_option|incl_trans: True transdecoder: Trinity.fasta.transdecoder.pep blastx: swissprot.blastx.outfmt6 gene_trans_map: Trinity.fasta.gene_to_trans_map hmmscan: TrinotatePFAM.out blastp: swissprot.blastp.outfmt6 keep_sqlite: True report_option|incl_pep: True trinity: Trinity.fasta |
attributes: name |
Trinity.fasta Trinity.fasta.transdecoder.pep Trinity.fasta.gene_to_trans_map swissprot.blastp.outfmt6 swissprot.blastx.outfmt6 TrinotatePFAM.out name |