| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.15.1+galaxy4 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.15.1+galaxy3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.15.1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.15.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.15.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.10 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.9 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.4.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.3.2.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.3.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.3.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.2.0 |
| bcftools_call |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bcftools | 1.15.1 | package |
| htslib | 1.15.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: mpileup.vcf sec_consensus_variant_calling|variant_calling|method: multiallelic sec_input_output|variants_only: True output_type: v |
name: value |
mpileup.vcf value |
| Test-2 |
input_file: mpileup.vcf sec_consensus_variant_calling|variant_calling|gvcf: 0 sec_consensus_variant_calling|variant_calling|method: multiallelic output_type: v |
name: value |
mpileup.vcf value |
| Test-3 |
input_file: mpileup.X.vcf sec_restrict|samples_file: mpileup.samples sec_consensus_variant_calling|variant_calling|method: multiallelic sec_file_format|ploidy_file: mpileup.ploidy output_type: v |
name: value |
mpileup.X.vcf mpileup.samples mpileup.ploidy value |
| Test-4 |
input_file: mpileup.X.vcf sec_consensus_variant_calling|variant_calling|method: consensus sec_file_format|ploidy_file: mpileup.ploidy output_type: v |
name: value |
mpileup.X.vcf mpileup.ploidy value |
| Test-5 |
input_file: mpileup.X.vcf sec_consensus_variant_calling|variant_calling|method: consensus sec_file_format|ploidy_file: mpileup.ploidy sec_input_output|output_tags: INFO/PV4 output_type: v |
name: value |
mpileup.X.vcf mpileup.ploidy value |
| Test-6 |
input_file: mpileup.vcf sec_restrict|regions_overlap: 1 sec_consensus_variant_calling|variant_calling|method: multiallelic sec_input_output|variants_only: True output_type: v |
name: value |
mpileup.vcf value |
| Test-7 |
input_file: mpileup.AD.vcf sec_consensus_variant_calling|variant_calling|method: multiallelic sec_input_output|group_samples: True output_type: v |
name: value |
mpileup.AD.vcf value |