Revision: 4:04144473e59e

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dada2_removebimeradenovo

Miscellaneous

Name: dada2: removeBimeraDenovo

Description: Remove bimeras from collections of unique sequences

Id: dada2_removeBimeraDenovo

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_removebimeradenovo/dada2_removeBimeraDenovo/1.18+galaxy0

Version: 1.18+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_removebimeradenovo/dada2_removeBimeraDenovo/1.20+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_removebimeradenovo/dada2_removeBimeraDenovo/1.18+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_removebimeradenovo/dada2_removeBimeraDenovo/1.16+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_removebimeradenovo/dada2_removeBimeraDenovo/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_removebimeradenovo/dada2_removeBimeraDenovo/1.12+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_removebimeradenovo/dada2_removeBimeraDenovo/1.12+galaxy0

dada2_removeBimeraDenovo

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
bioconductor-dada2	1.18	package

Functional tests

name	inputs	outputs	required files
Test-1	unqs: makeSequenceTable.tab	name: value	makeSequenceTable.tab value
Test-2	unqs: dada_F3D0_S188_L001_R1.Rdata	name: value	dada_F3D0_S188_L001_R1.Rdata value
Test-3	unqs: mergePairs_F3D0_S188_L001.Rdata method: pooled	name: value	mergePairs_F3D0_S188_L001.Rdata value