Repository revision
8:87dda030bc92

Repository 'openms_xfdr'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xfdr

XFDR tool metadata
Miscellaneous
XFDR
Calculates false discovery rate estimates on crosslink identifications
XFDR
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xfdr/XFDR/2.8+galaxy0
2.8+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xfdr/XFDR/2.8+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xfdr/XFDR/2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xfdr/XFDR/2.5+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xfdr/XFDR/2.3.0
XFDR
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.8 package
openms-thirdparty 2.8 package
omssa 2.1.9 package
blast 2.13.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: XFDR_test_in1.idXML
decoy_string: DECOY_
minborder: -50.0
maxborder: 50.0
mindeltas: 0.0
minionsmatched: 0
uniquexl: False
no_qvalues: False
minscore: -10.0
binsize: 0.1
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG']
name: value
name: value
name: value
name: value
XFDR_test_in1.idXML
value
Test-2 in: XFDR_test_in1.idXML
decoy_string: DECOY_
minborder: -50.0
maxborder: 50.0
mindeltas: 0.0
minionsmatched: 0
uniquexl: True
no_qvalues: True
minscore: -10.0
binsize: 0.1
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG']
name: value
name: value
name: value
name: value
XFDR_test_in1.idXML
value
Test-3 in: XFDR_test_in2.xquest.xml
decoy_string: DECOY_
minborder: -50.0
maxborder: 50.0
mindeltas: 0.0
minionsmatched: 0
uniquexl: False
no_qvalues: False
minscore: 0.0
binsize: 0.1
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG']
name: value
name: value
name: value
name: value
XFDR_test_in2.xquest.xml
value
Test-4 in: XFDR_test_in2.xquest.xml
decoy_string: DECOY_
minborder: -3.0
maxborder: 3.0
mindeltas: 0.0
minionsmatched: 0
uniquexl: False
no_qvalues: False
minscore: -10.0
binsize: 0.1
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG']
name: value
name: value
name: value
name: value
XFDR_test_in2.xquest.xml
value
Test-5 in: XFDR_test_in3.xquest.xml
decoy_string: DECOY_
minborder: -3.0
maxborder: 3.0
mindeltas: 0.0
minionsmatched: 0
uniquexl: False
no_qvalues: False
minscore: -10.0
binsize: 0.1
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG']
name: value
name: value
name: value
name: value
XFDR_test_in3.xquest.xml
value
Test-6 in: XFDR_test_in4.idXML
decoy_string: DECOY_
minborder: -50.0
maxborder: 50.0
mindeltas: 0.0
minionsmatched: 0
uniquexl: False
no_qvalues: False
minscore: -10.0
binsize: 0.1
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG']
name: value
name: value
XFDR_test_in4.idXML
value
Test-7 in: XFDR_test_in2.xquest.xml
decoy_string: DECOY_
minborder: -50.0
maxborder: 50.0
mindeltas: 0.0
minionsmatched: 0
uniquexl: True
no_qvalues: False
minscore: 0.0
binsize: 0.1
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG']
name: value
name: value
name: value
name: value
XFDR_test_in2.xquest.xml
value