| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xfdr/XFDR/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xfdr/XFDR/2.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xfdr/XFDR/2.3.0 |
| XFDR |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.5 | package |
| openms-thirdparty | 2.5 | package |
| blast | 2.9.0 | package |
| openjdk | 8.0.192 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: XFDR_test_in1.idXML decoy_string: DECOY_ minborder: -50.0 maxborder: 50.0 mindeltas: 0.0 minionsmatched: 0 uniquexl: False no_qvalues: False minscore: -10.0 binsize: 0.1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG'] |
name: value name: value name: value name: value |
XFDR_test_in1.idXML value |
| Test-2 |
in: XFDR_test_in1.idXML decoy_string: DECOY_ minborder: -50.0 maxborder: 50.0 mindeltas: 0.0 minionsmatched: 0 uniquexl: True no_qvalues: True minscore: -10.0 binsize: 0.1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG'] |
name: value name: value name: value name: value |
XFDR_test_in1.idXML value |
| Test-3 |
in: XFDR_test_in2.xquest.xml decoy_string: DECOY_ minborder: -50.0 maxborder: 50.0 mindeltas: 0.0 minionsmatched: 0 uniquexl: False no_qvalues: False minscore: 0.0 binsize: 0.1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG'] |
name: value name: value name: value name: value |
XFDR_test_in2.xquest.xml value |
| Test-4 |
in: XFDR_test_in2.xquest.xml decoy_string: DECOY_ minborder: -3.0 maxborder: 3.0 mindeltas: 0.0 minionsmatched: 0 uniquexl: False no_qvalues: False minscore: -10.0 binsize: 0.1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG'] |
name: value name: value name: value name: value |
XFDR_test_in2.xquest.xml value |
| Test-5 |
in: XFDR_test_in3.xquest.xml decoy_string: DECOY_ minborder: -3.0 maxborder: 3.0 mindeltas: 0.0 minionsmatched: 0 uniquexl: False no_qvalues: False minscore: -10.0 binsize: 0.1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG'] |
name: value name: value name: value name: value |
XFDR_test_in3.xquest.xml value |
| Test-6 |
in: XFDR_test_in4.idXML decoy_string: DECOY_ minborder: -50.0 maxborder: 50.0 mindeltas: 0.0 minionsmatched: 0 uniquexl: False no_qvalues: False minscore: -10.0 binsize: 0.1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG'] |
name: value name: value |
XFDR_test_in4.idXML value |
| Test-7 |
in: XFDR_test_in2.xquest.xml decoy_string: DECOY_ minborder: -50.0 maxborder: 50.0 mindeltas: 0.0 minionsmatched: 0 uniquexl: True no_qvalues: False minscore: 0.0 binsize: 0.1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_idXML_FLAG', 'out_mzIdentML_FLAG', 'out_xquest_FLAG'] |
name: value name: value name: value name: value |
XFDR_test_in2.xquest.xml value |