| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/qualimap_rnaseq/qualimap_rnaseq/2.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/qualimap_rnaseq/qualimap_rnaseq/2.2.2d+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/qualimap_rnaseq/qualimap_rnaseq/2.2.2c+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/qualimap_rnaseq/qualimap_rnaseq/2.2.2c |
| qualimap_rnaseq |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qualimap | 2.2.2d | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
seq_info|input: test_mapped_reads.bam seq_info|treat_as_pe: features: features.gtf |
attributes: name |
test_mapped_reads.bam features.gtf name |
| Test-2 |
features: features.gtf counts_out|ccol_name: try_this seq_info|treat_as_pe: --paired read_filtering|treat_multimappers: proportional read_filtering|library_type: strand-specific-forward seq_info|input: test_mapped_reads.bam counts_out|report_counts: -oc counts.txt |
attributes: name attributes: name |
test_mapped_reads.bam features.gtf name |