Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.2 (this tool) |
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.1 |
bwa_mem |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bwa | 0.7.17 | package |
samtools | 1.6 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
reference_source|ref_file: bwa-mem-mt-genome.fa reference_source|reference_source_selector: history fastq_input|fastq_input1: bwa-mem-fastq1.fq fastq_input|fastq_input2: bwa-mem-fastq2.fq fastq_input|fastq_input_selector: paired analysis_type|analysis_type_selector: illumina |
name: value |
bwa-mem-mt-genome.fa bwa-mem-fastq1.fq bwa-mem-fastq2.fq value |
Test-2 |
reference_source|ref_file: bwa-mem-mt-genome.fa reference_source|reference_source_selector: history fastq_input|fastq_input1: bwa-mem-fasta1.fa fastq_input|fastq_input_selector: single analysis_type|analysis_type_selector: illumina |
name: value |
bwa-mem-mt-genome.fa bwa-mem-fasta1.fa value |
Test-3 |
reference_source|ref_file: bwa-mem-mt-genome.fa reference_source|reference_source_selector: history fastq_input|fastq_input1: bwa-mem-fastq1.fq.gz fastq_input|fastq_input2: bwa-mem-fastq2.fq fastq_input|fastq_input_selector: paired analysis_type|analysis_type_selector: illumina |
name: value |
bwa-mem-mt-genome.fa bwa-mem-fastq1.fq.gz bwa-mem-fastq2.fq value |
Test-4 |
reference_source|ref_file: bwa-mem-mt-genome.fa reference_source|index_a: is reference_source|reference_source_selector: history fastq_input|fastq_input1: bwa-mem-fastq1.fq fastq_input|fastq_input2: bwa-mem-fastq2.fq fastq_input|fastq_input_selector: paired rg|read_group_id_conditional|ID: rg1 rg|PL: CAPILLARY rg|read_group_lb_conditional|LB: AARDVARK-1 rg|rg_selector: set analysis_type|analysis_type_selector: illumina |
name: value |
bwa-mem-mt-genome.fa bwa-mem-fastq1.fq bwa-mem-fastq2.fq value |
Test-5 |
reference_source|ref_file: bwa-mem-mt-genome.fa reference_source|reference_source_selector: history fastq_input|fastq_input1: bwa-mem-fastq1.fq fastq_input|fastq_input2: bwa-mem-fastq2.fq fastq_input|fastq_input_selector: paired analysis_type|analysis_type_selector: illumina output_sort: unsorted |
name: value |
bwa-mem-mt-genome.fa bwa-mem-fastq1.fq bwa-mem-fastq2.fq value |
Test-6 |
reference_source|ref_file: bwa-mem-mt-genome.fa reference_source|reference_source_selector: history fastq_input|fastq_input1: bwa-mem-fastq1.fq fastq_input|fastq_input2: bwa-mem-fastq2.fq fastq_input|fastq_input_selector: paired analysis_type|analysis_type_selector: illumina output_sort: name |
name: value |
bwa-mem-mt-genome.fa bwa-mem-fastq1.fq bwa-mem-fastq2.fq value |