| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_antitarget/cnvkit_antitarget/0.9.12+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_antitarget/cnvkit_antitarget/0.9.11+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_antitarget/cnvkit_antitarget/0.9.11+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_antitarget/cnvkit_antitarget/0.9.10+galaxy0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_antitarget/cnvkit_antitarget/0.9.10+galaxy0 |
| cnvkit_antitarget |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| cnvkit | 0.9.12 | package |
| samtools | 1.21 | package |
| Additional information about this tool |
ln -s '$targets_file' ./capture.bed &&
#if $access
ln -s '$access' ./access.bed &&
#end if
cnvkit.py antitarget
./capture.bed
#if $access
--access ./access.bed
#end if
#if str($avg_size)
--avg-size $avg_size
#end if
#if str($min_size)
--min-size $min_size
#end if
--output capture.antitarget.bed
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
targets_file: capture.bed access: access-excludes.bed |
name: value |
capture.bed access-excludes.bed value |