Repository revision
3:b5c3b1856370

Repository 'samtools_phase'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_phase

Call and phase tool metadata
Miscellaneous
heterozygous SNPs
samtools_phase
toolshed.g2.bx.psu.edu/repos/devteam/samtools_phase/samtools_phase/2.0.1
2.0.1
samtools 2>&1 | grep Version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/samtools_phase/samtools_phase/2.0.2
toolshed.g2.bx.psu.edu/repos/devteam/samtools_phase/samtools_phase/2.0.1 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/samtools_phase/samtools_phase/2.0
toolshed.g2.bx.psu.edu/repos/devteam/samtools_phase/samtools_phase/1.0.0
samtools_phase
Requirements (dependencies defined in the <requirements> tag set)
name version type
samtools 1.9 package
Functional tests
name inputs outputs required files
Test-1 input_bam: samtools_phase_in_1.bam
option_set|option_sets: default
attributes: name
attributes: name
attributes: name
attributes: name
samtools_phase_in_1.bam
name
Test-2 option_set|min_bq: 13
option_set|read_depth: 256
option_set|min_het: 37
option_set|ignore_chimeras: False
option_set|drop_ambiguous: True
option_set|block_length: 13
input_bam: samtools_phase_in_2.bam
option_set|option_sets: advanced
attributes: name
attributes: name
attributes: name
attributes: name
samtools_phase_in_2.bam
name
Test-3 option_set|min_bq: 13
option_set|read_depth: 256
option_set|min_het: 37
option_set|ignore_chimeras: True
option_set|drop_ambiguous: False
option_set|block_length: 13
input_bam: samtools_phase_in_2.bam
option_set|option_sets: advanced
attributes: name
attributes: name
attributes: name
attributes: name
samtools_phase_in_2.bam
name