| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/metaphlan_hclust_heatmap/metaphlan_hclust_heatmap/2.6.0.0 (this tool) |
| metaphlan_hclust_heatmap |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| metaphlan2 | 2.6.0 | package |
| Additional information about this tool |
metaphlan_hclust_heatmap.py
--in '$in'
#if $output_format == "png"
--out 'output.png'
#else if $output_format == "pdf"
--out 'output.pdf'
#else if $output_format == "svg"
--out 'output.svg'
#end if
-m '$m'
-d '$d'
-f '$f'
#if $x
-x '$x'
#end if
#if $y
-y '$y'
#end if
--minv '$minv'
#if $maxv
--maxv $maxv
#end if
--tax_lev '$tax_lev'
--perc '$perc'
#if $top
--top '$top'
#end if
--sdend_h '$sdend_h'
--fdend_w '$fdend_w'
--cm_h '$cm_h'
--font_size '$font_size'
--clust_line_w '$clust_line_w'
-c '$c'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: merged_community_profile.tabular output_format: png m: average d: braycurtis f: correlation minv: 0 tax_lev: a perc: 90 sdend_h: 0.1 fdend_w: 0.1 cm_h: 0.03 font_size: 7 clust_line_w: 1 c: jet |
name: value |
merged_community_profile.tabular value |
| Test-2 |
in: merged_community_profile.tabular output_format: pdf m: ward d: euclidean f: euclidean minv: 0 tax_lev: a perc: 90 sdend_h: 0.1 fdend_w: 0.1 cm_h: 0.03 font_size: 7 clust_line_w: 1 c: pink |
name: value |
merged_community_profile.tabular value |
| Test-3 |
in: merged_community_profile.tabular output_format: svg m: complete d: hamming f: matching minv: 0 tax_lev: a perc: 90 sdend_h: 0.1 fdend_w: 0.1 cm_h: 0.03 font_size: 7 clust_line_w: 1 c: pink |
name: value |
merged_community_profile.tabular value |