| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/2.1.2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/2.1.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/1.5.5.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/1.5.5.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/1.5.5 |
| iqtree |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| iqtree | 2.1.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
general_options|s: example.phy general_options|seqtype: AA general_options|seed: 1257 modelling_parameters|automatic_model|cond_model|m: TEST modelling_parameters|automatic_model|msub: nuclear modelling_parameters|automatic_model|merit: AICc modelling_parameters|automatic_model|madd: LG4M,LG4X bootstrap_parameters|ultrafast_bootstrap|ufboot: 1000 |
name: value name: value name: value name: value name: value name: value |
example.phy value |
| Test-2 |
general_options|s: example.phy general_options|seqtype: AA general_options|seed: 1257 modelling_parameters|automatic_model|msub: nuclear modelling_parameters|automatic_model|cmin: 2 modelling_parameters|automatic_model|cmax: 10 modelling_parameters|automatic_model|merit: AICc modelling_parameters|automatic_model|madd: LG4M,LG4X tree_parameters|tree_search|ninit: 100 tree_parameters|tree_search|ntop: 20 tree_parameters|tree_search|nbest: 5 tree_parameters|tree_search|nstop: 100 tree_parameters|tree_search|radius: 6 tree_parameters|tree_search|perturb: 0.5 tree_parameters|constructing_consensus|sup_min: 0.0 bootstrap_parameters|ultrafast_bootstrap|nmax: 1000 bootstrap_parameters|ultrafast_bootstrap|bcor: 0.99 bootstrap_parameters|ultrafast_bootstrap|nstep: 100 bootstrap_parameters|ultrafast_bootstrap|beps: 0.5 |
name: value name: value |
example.phy value |
| Test-3 |
general_options|s: example.phy general_options|seqtype: AA general_options|seed: 1257 modelling_parameters|automatic_model|cond_model|m: TESTONLY modelling_parameters|automatic_model|msub: nuclear modelling_parameters|automatic_model|cmin: 2 modelling_parameters|automatic_model|cmax: 10 modelling_parameters|automatic_model|merit: AICc modelling_parameters|automatic_model|madd: LG4M,LG4X tree_parameters|tree_search|ninit: 100 tree_parameters|tree_search|ntop: 20 tree_parameters|tree_search|nbest: 5 tree_parameters|tree_search|nstop: 100 tree_parameters|tree_search|radius: 6 tree_parameters|tree_search|perturb: 0.5 tree_parameters|constructing_consensus|sup_min: 0.0 bootstrap_parameters|ultrafast_bootstrap|nmax: 1000 bootstrap_parameters|ultrafast_bootstrap|bcor: 0.99 bootstrap_parameters|ultrafast_bootstrap|nstep: 100 bootstrap_parameters|ultrafast_bootstrap|beps: 0.5 |
name: value name: value |
example.phy value |
| Test-4 |
general_options|s: example.phy |
name: value name: value |
example.phy value |
| Test-5 |
general_options|s: example.phy modelling_parameters|automatic_model|cond_model|m: GTR+G{0.9} modelling_parameters|automatic_model|cond_model|opt_custommodel: True |
name: value name: value |
example.phy value |
| Test-6 |
general_options|s: short.fasta general_options|short_alignments: True |
name: value |
short.fasta value |
| Test-7 |
general_options|s: dates.fa general_options|seed: 122125 time_tree|date_source|date: dates.tabular time_tree|date_source|select_source: dataset tree_parameters|tree_search|n: 100 |
name: value |
dates.fa dates.tabular value |