| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/1.5.5.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/1.5.5.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/1.5.5 |
| iqtree |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| iqtree | 1.5.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
modelling_parameters|automatic_model|madd: LG4M,LG4X general_options|seed: 1257 modelling_parameters|automatic_model|merit: AICc modelling_parameters|automatic_model|msub: nuclear modelling_parameters|automatic_model|cond_model|m: TESTNEW general_options|s: example.phy general_options|st: AA bootstrap_parameters|ultrafast_bootstrap|bb: 1000 |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
example.phy name |
| Test-2 |
bootstrap_parameters|ultrafast_bootstrap|nstep: 100 tree_parameters|tree_search|ntop: 20 modelling_parameters|automatic_model|madd: LG4M,LG4X bootstrap_parameters|nonparametric_bootstrap|b: 2 general_options|seed: 1257 modelling_parameters|automatic_model|merit: AICc bootstrap_parameters|ultrafast_bootstrap|bcor: 0.99 general_options|s: example.phy tree_parameters|tree_search|nbest: 5 bootstrap_parameters|ultrafast_bootstrap|nm: 1000 bootstrap_parameters|ultrafast_bootstrap|beps: 0.5 tree_parameters|tree_search|pers: 0.5 modelling_parameters|automatic_model|msub: nuclear tree_parameters|tree_search|sprrad: 6 tree_parameters|tree_search|ninit: 100 modelling_parameters|automatic_model|cmin: 2 modelling_parameters|automatic_model|cmax: 10 tree_parameters|tree_search|nstop: 100 tree_parameters|constructing_consensus|minsup: 0.0 general_options|st: AA |
attributes: name attributes: name |
example.phy name |
| Test-3 |
bootstrap_parameters|ultrafast_bootstrap|nstep: 100 tree_parameters|tree_search|ntop: 20 modelling_parameters|automatic_model|madd: LG4M,LG4X general_options|seed: 1257 modelling_parameters|automatic_model|merit: AICc bootstrap_parameters|ultrafast_bootstrap|bcor: 0.99 general_options|s: example.phy tree_parameters|tree_search|nbest: 5 bootstrap_parameters|ultrafast_bootstrap|nm: 1000 bootstrap_parameters|ultrafast_bootstrap|beps: 0.5 tree_parameters|tree_search|pers: 0.5 modelling_parameters|automatic_model|msub: nuclear tree_parameters|tree_search|sprrad: 6 modelling_parameters|automatic_model|cond_model|m: TESTONLY modelling_parameters|automatic_model|cmin: 2 modelling_parameters|automatic_model|cmax: 10 tree_parameters|tree_search|nstop: 100 tree_parameters|constructing_consensus|minsup: 0.0 general_options|st: AA tree_parameters|tree_search|ninit: 100 |
attributes: name attributes: name |
example.phy name |
| Test-4 |
general_options|s: example.phy |
attributes: name attributes: name |
example.phy name |