medaka variant tool tool metadata

Miscellaneous

Name: medaka variant tool

Description: decodes variant calls from medaka consensus output

Id: medaka_variant

Guid: toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.4.4+galaxy0

Version: 1.4.4+galaxy0

Version command string: medaka --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.4.4+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.4.4+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.3.2+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.3.2+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy7

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy6

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy5

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy4

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy3

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy2

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.1+galaxy0

medaka_variant

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

medaka

1.4.4

package

Functional tests

name

inputs

outputs

required files

Test-1

pool|inputs: ['medaka_test.hdf', 'medaka_test.hdf']
pool|pool_mode: Yes
reference_source|ref_file: ref.fasta
reference_source|reference_source_selector: history
ambig_ref: True
output_annotated|in_bam: medaka_test.bam
output_annotated|output_annotated_select: true
output_log_bool: True

name: value
name: value

medaka_test.hdf
ref.fasta
medaka_test.bam
value

Test-2

pool|input: medaka_test.hdf
pool|pool_mode: No
reference_source|ref_file: ref.fasta.gz
reference_source|reference_source_selector: history
ambig_ref: True
output_annotated|in_bam: medaka_test.bam
output_annotated|output_annotated_select: true
output_log_bool: True

name: value
name: value

medaka_test.hdf
ref.fasta.gz
medaka_test.bam
value

Test-3

name: value

medaka_test.hdf
ref.fasta
value