| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy5 |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.1+galaxy0 |
| medaka_variant |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| medaka | 1.0.3 | package |
| scipy | 1.4.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
pool|inputs: ['medaka_test.hdf', 'medaka_test.hdf'] pool|pool_mode: Yes reference_source|ref_file: ref.fasta reference_source|reference_source_selector: history output_annotated|in_bam: medaka_test.bam output_annotated|output_annotated_select: true output_log_bool: True |
name: value name: value name: value |
medaka_test.hdf ref.fasta medaka_test.bam value |
| Test-2 |
pool|input: medaka_test.hdf pool|pool_mode: No reference_source|ref_file: ref.fasta reference_source|reference_source_selector: history output_annotated|in_bam: medaka_test.bam output_annotated|output_annotated_select: true output_log_bool: True |
name: value name: value name: value |
medaka_test.hdf ref.fasta medaka_test.bam value |
| Test-3 |
pool|input: medaka_test.hdf pool|pool_mode: No reference_source|ref_file: ref.fasta reference_source|reference_source_selector: history output_annotated|output_annotated_select: false output_log_bool: False |
name: value |
medaka_test.hdf ref.fasta value |