Repository revision
12:d0304fb829c0

Repository 'openms_multiplexresolver'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_multiplexresolver

MultiplexResolver tool metadata
Miscellaneous
Completes peptide multiplets and resolves conflicts within them.
MultiplexResolver
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_multiplexresolver/MultiplexResolver/2.6+galaxy0
2.6+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_multiplexresolver/MultiplexResolver/2.8+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_multiplexresolver/MultiplexResolver/2.6+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_multiplexresolver/MultiplexResolver/2.5+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_multiplexresolver/MultiplexResolver/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_multiplexresolver/MultiplexResolver/2.2.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_multiplexresolver/MultiplexResolver/2.1.0
MultiplexResolver
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.6 package
openms-thirdparty 2.6 package
blast 2.9.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: MultiplexResolver_1_input.consensusXML
algorithm|labels: [][Lys4,Arg6][Lys8,Arg10]
algorithm|missed_cleavages: 1
algorithm|mass_tolerance: 0.1
algorithm|mz_tolerance: 10
algorithm|rt_tolerance: 5
labels|Arg6: 6.0201290268
labels|Arg10: 10.0082686
labels|Lys4: 4.0251069836
labels|Lys6: 6.0201290268
labels|Lys8: 8.0141988132
labels|Leu3: 3.01883
labels|Dimethyl0: 28.0313
labels|Dimethyl4: 32.056407
labels|Dimethyl6: 34.063117
labels|Dimethyl8: 36.07567
labels|ICPL0: 105.021464
labels|ICPL4: 109.046571
labels|ICPL6: 111.041593
labels|ICPL10: 115.0667
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_conflicts_FLAG']
name: value
name: value
name: value
MultiplexResolver_1_input.consensusXML
value
Test-2 in: MultiplexResolver_2_input.consensusXML
algorithm|labels: [Dimethyl0][Dimethyl4][Dimethyl8]
algorithm|missed_cleavages: 4
algorithm|mass_tolerance: 0.1
algorithm|mz_tolerance: 10
algorithm|rt_tolerance: 5
labels|Arg6: 6.0201290268
labels|Arg10: 10.0082686
labels|Lys4: 4.0251069836
labels|Lys6: 6.0201290268
labels|Lys8: 8.0141988132
labels|Leu3: 3.01883
labels|Dimethyl0: 28.0313
labels|Dimethyl4: 32.056407
labels|Dimethyl6: 34.063117
labels|Dimethyl8: 36.07567
labels|ICPL0: 105.021464
labels|ICPL4: 109.046571
labels|ICPL6: 111.041593
labels|ICPL10: 115.0667
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_conflicts_FLAG']
name: value
name: value
name: value
MultiplexResolver_2_input.consensusXML
value
Test-3 in: MultiplexResolver_3_input.consensusXML
algorithm|labels: [][Leu3]
algorithm|missed_cleavages: 2
algorithm|mass_tolerance: 0.1
algorithm|mz_tolerance: 10
algorithm|rt_tolerance: 5
labels|Arg6: 6.0201290268
labels|Arg10: 10.0082686
labels|Lys4: 4.0251069836
labels|Lys6: 6.0201290268
labels|Lys8: 8.0141988132
labels|Leu3: 3.01883
labels|Dimethyl0: 28.0313
labels|Dimethyl4: 32.056407
labels|Dimethyl6: 34.063117
labels|Dimethyl8: 36.07567
labels|ICPL0: 105.021464
labels|ICPL4: 109.046571
labels|ICPL6: 111.041593
labels|ICPL10: 115.0667
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_conflicts_FLAG']
name: value
name: value
name: value
MultiplexResolver_3_input.consensusXML
value
Test-4 in: MultiplexResolver_4_input.consensusXML
in_blacklist: MultiplexResolver_4_input.mzML
algorithm|labels: [Dimethyl0][Dimethyl6]
algorithm|missed_cleavages: 3
algorithm|mass_tolerance: 0.1
algorithm|mz_tolerance: 10
algorithm|rt_tolerance: 10
labels|Arg6: 6.0201290268
labels|Arg10: 10.0082686
labels|Lys4: 4.0251069836
labels|Lys6: 6.0201290268
labels|Lys8: 8.0141988132
labels|Leu3: 3.01883
labels|Dimethyl0: 28.0313
labels|Dimethyl4: 32.056407
labels|Dimethyl6: 34.063117
labels|Dimethyl8: 36.07567
labels|ICPL0: 105.021464
labels|ICPL4: 109.046571
labels|ICPL6: 111.041593
labels|ICPL10: 115.0667
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_conflicts_FLAG']
name: value
name: value
name: value
MultiplexResolver_4_input.consensusXML
MultiplexResolver_4_input.mzML
value