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Repository revision

Revision: 7:be072920a53e

Repository 'hmmer_hmmscan'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan

hmmscan tool metadata

Miscellaneous

Name: hmmscan

Description: search protein sequence(s) against a protein profile database

Id: hmmer_hmmscan

Guid: toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/3.3.2+galaxy0

Version: 3.3.2+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/3.3.2+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/3.3.2+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/3.3+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/3.3

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/3.2

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/3.1b2

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/0.1.1

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/0.1.0

hmmer_hmmscan

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hmmer

3.3.2

package

Functional tests

name

inputs

outputs

required files

Test-1

input_hmm_conditional|hmmfile: MADE1.hmm
input_hmm_conditional|input_hmm_source: history
seqfile: dna_target2.fa
notextw: True
seed: 4

name: value
name: value
name: value
name: value

MADE1.hmm
dna_target2.fa
value