| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/merge_feature_table_and_taxonomy/2019.4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/merge_feature_table_and_taxonomy/2018.4 |
| merge_feature_table_and_taxonomy |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime2 | 2019.4 | package |
| Additional information about this tool |
mkdir out; qiime tools export --input-path $taxonomy_qza --output-path out; qiime tools export --input-path $biom_qza --output-path out; sed -i '1s;^;#;' out/*.tsv; sed -i 's/Confidence/confidence/g' out/*.tsv; sed -i 's/Taxon/taxonomy/g' out/*.tsv; sed -i 's/Feature ID/OTU ID/g' out/*.tsv; biom add-metadata -i out/*.biom -o table_with_sample_metadata.biom --observation-metadata-fp out/*.tsv ; mv *.biom $biom_and_tax_merged
| Functional tests |