Repository revision
4:71f124e02000

Repository 'qiime2_wrappers'
hg clone https://toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers

qiime composition ancom tool metadata
Miscellaneous
- Apply ANCOM to identify features that differ in abundance.
qiime_composition_ancom
toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_composition_ancom/2019.4
2019.4
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_composition_ancom/2019.4 (this tool)
toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_composition_ancom/2018.4
qiime_composition_ancom
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime2 2019.4 package
Additional information about this tool
qiime composition ancom

--i-table=$itable



#if $metadatafile:
 --m-metadata-file=$metadatafile
#end if



--m-metadata-column="$mmetadatacolumn"

#if str($pdifferencefunction) != 'None':
--p-difference-function=$pdifferencefunction
#end if

#if str($ptransformfunction) != 'None':
--p-transform-function=$ptransformfunction
#end if

--o-visualization=ovisualization;

qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization'
  
None
False
Functional tests
No functional tests defined