| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_cutadapt_demux-single/2019.4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_cutadapt_demux-single/2018.4 |
| qiime_cutadapt_demux-single |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime2 | 2019.4 | package |
| Additional information about this tool |
qiime cutadapt demux-single
--i-seqs=$iseqs
#if '__sq__' in str($mbarcodescolumn):
#set $mbarcodescolumn_temp = $mbarcodescolumn.replace('__sq__', "'")
#set $mbarcodescolumn = $mbarcodescolumn_temp
#end if
--m-barcodes-column="$mbarcodescolumn"
--o-per-sample-sequences=opersamplesequences
--o-untrimmed-sequences=ountrimmedsequences
#if $input_files_mbarcodesfile:
#def list_dict_to_string(list_dict):
#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
#for d in list_dict[1:]:
#set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
#end for
#return $file_list
#end def
--m-barcodes-file=$list_dict_to_string($input_files_mbarcodesfile)
#end if
#if $perrorrate:
--p-error-rate=$perrorrate
#end if
;
cp opersamplesequences.qza $opersamplesequences;
cp ountrimmedsequences.qza $ountrimmedsequences
| Functional tests |