| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_diversity_beta-rarefaction/2019.4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_diversity_beta-rarefaction/2018.4 |
| qiime_diversity_beta-rarefaction |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime2 | 2019.4 | package |
| Additional information about this tool |
qiime diversity beta-rarefaction
--i-table=$itable
--p-metric=$pmetric
--p-clustering-method=$pclusteringmethod
#if str($psamplingdepth):
--p-sampling-depth="$psamplingdepth"
#end if
#if str($iphylogeny) != 'None':
--i-phylogeny=$iphylogeny
#end if
#if str($piterations):
--p-iterations=$piterations
#end if
#if str($pcorrelationmethod) != 'None':
--p-correlation-method=$pcorrelationmethod
#end if
#if str($pcolorscheme) != 'None':
--p-color-scheme=$pcolorscheme
#end if
#if $input_files_mmetadatafile:
#def list_dict_to_string(list_dict):
#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
#for d in list_dict[1:]:
#set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
#end for
#return $file_list
#end def
--m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
#end if
--o-visualization=ovisualization
;
qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization';
| Functional tests |