| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_emperor_procrustes-plot/2019.4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_emperor_procrustes-plot/2018.4 |
| qiime_emperor_procrustes-plot |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime2 | 2019.4 | package |
| Additional information about this tool |
qiime emperor procrustes-plot
--i-reference-pcoa=$ireferencepcoa
--i-other-pcoa=$iotherpcoa
#if $input_files_mmetadatafile:
#def list_dict_to_string(list_dict):
#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
#for d in list_dict[1:]:
#set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
#end for
#return $file_list
#end def
--m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
#end if
#if '__sq__' in str($pcustomaxes):
#set $pcustomaxes_temp = $pcustomaxes.replace('__sq__', "'")
#set $pcustomaxes = $pcustomaxes_temp
#end if
#if '__cb__' in str($pcustomaxes):
#set $pcustomaxes_temp = $pcustomaxes.replace('__cb__', "]")
#set $pcustomaxes = $pcustomaxes_temp
#end if
#if str($pcustomaxes):
--p-custom-axes="$pcustomaxes"
#end if
#if $pignoremissingsamples:
--p-ignore-missing-samples
#end if
--o-visualization=ovisualization
;
qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization'
| Functional tests |