| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_longitudinal_first-differences/2019.4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_longitudinal_first-differences/2018.4 |
| qiime_longitudinal_first-differences |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime2 | 2019.4 | package |
| Additional information about this tool |
qiime longitudinal first-differences
--p-state-column="$pstatecolumn"
--p-metric="$pmetric"
#if '__pd__' in str($pindividualidcolumn):
#set $pwhere_temp = $pindividualidcolumn.replace('__pd__', "#")
#set $pindividualidcolumn = $pwhere_temp
#end if
--p-individual-id-column="$pindividualidcolumn"
#if str($itable) != 'None':
--i-table=$itable
#end if
#if str($preplicatehandling) != 'None':
--p-replicate-handling=$preplicatehandling
#end if
#if str($pbaseline):
--p-baseline="$pbaseline"
#end if
#if $input_files_mmetadatafile:
#def list_dict_to_string(list_dict):
#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
#for d in list_dict[1:]:
#set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
#end for
#return $file_list
#end def
--m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
#end if
--o-first-differences=ofirstdifferences
;
cp ofirstdifferences.qza $ofirstdifferences
| Functional tests |