| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_longitudinal_linear-mixed-effects/2019.4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_longitudinal_linear-mixed-effects/2018.4 |
| qiime_longitudinal_linear-mixed-effects |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime2 | 2019.4 | package |
| Additional information about this tool |
qiime longitudinal linear-mixed-effects
#if $input_files_mmetadatafile:
#def list_dict_to_string(list_dict):
#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
#for d in list_dict[1:]:
#set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
#end for
#return $file_list
#end def
--m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
#end if
--p-state-column="$pstatecolumn"
--p-individual-id-column="$pindividualidcolumn"
#if str($itable) != 'None':
--i-table=$itable
#end if
#if str($pmetric):
--p-metric="$pmetric"
#end if
#if str($pgroupcolumns):
--p-group-columns="$pgroupcolumns"
#end if
#if str($prandomeffects):
--p-random-effects="$prandomeffects"
#end if
#if str($ppalette) != 'None':
--p-palette=$ppalette
#end if
#if $plowess:
--p-lowess
#end if
#if str($pci):
--p-ci=$pci
#end if
#if str($pformula):
--p-formula="$pformula"
#end if
--o-visualization=ovisualization
;
qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization';
| Functional tests |