| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_phylogeny_align-to-tree-mafft-fasttree/2019.4 (this tool) |
| qiime_phylogeny_align-to-tree-mafft-fasttree |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime2 | 2019.4 | package |
| Additional information about this tool |
qiime phylogeny align-to-tree-mafft-fasttree
--i-sequences=$isequences
#set $pnthreads = '${GALAXY_SLOTS:-4}'
#if str($pnthreads):
--p-n-threads="$pnthreads"
#end if
#if str($pmaskmaxgapfrequency):
--p-mask-max-gap-frequency=$pmaskmaxgapfrequency
#end if
#if str($pmaskminconservation):
--p-mask-min-conservation=$pmaskminconservation
#end if
--o-alignment=oalignment
--o-masked-alignment=omaskedalignment
--o-tree=otree
--o-rooted-tree=orootedtree
;
cp oalignment.qza $oalignment;
cp omaskedalignment.qza $omaskedalignment;
cp otree.qza $otree;
cp orootedtree.qza $orootedtree
| Functional tests |