qiime sample-classifier regress-samples

--i-table=$itable
--m-metadata-column="$mmetadatacolumn"

#if str($ptestsize):
 --p-test-size=$ptestsize
#end if

#if str($pstep):
 --p-step=$pstep
#end if

#if str($pcv):
 --p-cv=$pcv
#end if

#if str($prandomstate):
 --p-random-state="$prandomstate"
#end if

#set $pnjobs = '${GALAXY_SLOTS:-4}'

#if str($pnjobs):
 --p-n-jobs="$pnjobs"
#end if


#if str($pnestimators):
 --p-n-estimators=$pnestimators
#end if

#if str($pestimator) != 'None':
 --p-estimator=$pestimator
#end if

#if $poptimizefeatureselection:
 --p-optimize-feature-selection
#end if

#if $pstratify:
 --p-stratify
#end if

#if $pparametertuning:
 --p-parameter-tuning
#end if

#if str($pmissingsamples) != 'None':
 --p-missing-samples=$pmissingsamples
#end if




#if $metadatafile:
 --m-metadata-file=$metadatafile
#end if




--o-sample-estimator=osampleestimator
--o-feature-importance=ofeatureimportance
--o-predictions=opredictions
--o-model-summary=omodelsummary
--o-accuracy-results=oaccuracyresults
;
cp osampleestimator.qza $osampleestimator;
cp ofeatureimportance.qza $ofeatureimportance;
cp opredictions.qza $opredictions;
qiime tools export --input-path omodelsummary.qzv --output-path out   && mkdir -p '$omodelsummary.files_path'
&& cp -r out/* '$omodelsummary.files_path'
&& mv '$omodelsummary.files_path/index.html' '$omodelsummary';
qiime tools export --input-path oaccuracyresults.qzv --output-path out   && mkdir -p '$oaccuracyresults.files_path'
&& cp -r out/* '$oaccuracyresults.files_path'
&& mv '$oaccuracyresults.files_path/index.html' '$oaccuracyresults'