| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_vsearch_uchime-ref/2019.4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/florianbegusch/qiime2_wrappers/qiime_vsearch_uchime-ref/2018.4 |
| qiime_vsearch_uchime-ref |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime2 | 2019.4 | package |
| Additional information about this tool |
qiime vsearch uchime-ref
--i-sequences=$isequences
--i-table=$itable
--i-reference-sequences=$ireferencesequences
#if str($pdn):
--p-dn=$pdn
#end if
#if str($pmindiffs):
--p-mindiffs=$pmindiffs
#end if
#if str($pmindiv):
--p-mindiv=$pmindiv
#end if
#if str($pminh):
--p-minh=$pminh
#end if
#if str($pxn):
--p-xn=$pxn
#end if
#set $pthreads = '${GALAXY_SLOTS:-4}'
#if str($pthreads):
--p-threads="$pthreads"
#end if
--o-chimeras=ochimeras
--o-nonchimeras=ononchimeras
--o-stats=ostats
;
cp ochimeras.qza $ochimeras;
cp ononchimeras.qza $ononchimeras;
cp ostats.qza $ostats
| Functional tests |