| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/ccat/peakcalling_ccat/0.0.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/ccat/peakcalling_ccat/0.0.1 (this tool) |
| peakcalling_ccat |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| CCAT | 3.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
options_type|moving_step: 50 options_type|random_seed: 123456 options_type|min_score: 5.0 input_control_file: chipseq_input.bed.gz options_type|is_strand_sensitive_mode: 0 options_type|min_count: 4 options_type|output_num: 100000 input_tag_file: chipseq_enriched.bed.gz options_type|fragment_size: 200 options_type|options_type_selector: advanced options_type|bootstrap_pass: 50 options_type|sliding_window_size: 500 |
output_peak_file: ccat_test_peak_out_1.interval.re_match output_region_file: ccat_test_region_out_1.interval.re_match output_top_file: ccat_test_top_out_1.interval.sorted.re_match output_log_file: ccat_test_log_out_1.txt |
chipseq_enriched.bed.gz chipseq_input.bed.gz peakcalling_ccat/3.0/ccat_test_peak_out_1.interval.re_match peakcalling_ccat/3.0/ccat_test_region_out_1.interval.re_match peakcalling_ccat/3.0/ccat_test_top_out_1.interval.sorted.re_match peakcalling_ccat/3.0/ccat_test_log_out_1.txt |
| Test-2 |
input_control_file: chipseq_input.bed.gz options_type|options_type_selector: basic input_tag_file: chipseq_enriched.bed.gz options_type|input_config_file: ccat_3.0_histone_config |
output_peak_file: ccat_test_peak_out_1.interval.re_match output_region_file: ccat_test_region_out_1.interval.re_match output_top_file: ccat_test_top_out_1.interval.sorted.re_match output_log_file: ccat_test_log_out_1.txt |
chipseq_enriched.bed.gz chipseq_input.bed.gz peakcalling_ccat/3.0/ccat_test_peak_out_1.interval.re_match peakcalling_ccat/3.0/ccat_test_region_out_1.interval.re_match peakcalling_ccat/3.0/ccat_test_top_out_1.interval.sorted.re_match peakcalling_ccat/3.0/ccat_test_log_out_1.txt |