Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/2.6.0.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/2.4.0.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.3 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.2 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.1 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.0 |
cardinal_filtering |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bioconductor-cardinal | 2.4.0 | package |
r-base | 3.6.1 | package |
r-gridextra | 2.3 | package |
r-ggplot2 | 3.2.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
pixels_cond|max_x_range: 20 pixels_cond|max_y_range: 2 features_cond|max_mz: 500 pixels_cond|min_x_range: 1 pixels_cond|min_y_range: 2 features_cond|min_mz: 350 features_cond|features_filtering: features_range infile: pixels_cond|pixel_filtering: pixel_range |
attributes: name attributes: name |
name |
Test-2 |
pixels_cond|annotation_file: inputpixels_2column.tabular pixels_cond|column_y: 3 infile: pixels_cond|pixel_filtering: two_columns pixels_cond|column_x: 1 |
attributes: name attributes: name |
inputpixels_2column.tabular name |
Test-3 |
pixels_cond|max_x_range: 10 pixels_cond|max_y_range: 20 pixels_cond|min_x_range: 0 features_cond|feature_column: 1 features_cond|mz_tabular: featuresofinterest5.tabular features_cond|feature_header: False features_cond|features_filtering: features_list pixels_cond|min_y_range: 2 infile: pixels_cond|pixel_filtering: pixel_range |
attributes: name attributes: name |
featuresofinterest5.tabular name |
Test-4 |
infile: |
attributes: name attributes: name |
name |
Test-5 |
infile: preprocessed.RData |
attributes: name attributes: name |
preprocessed.RData name |
Test-6 |
processed_cond|units: ppm features_cond|feature_column: 1 features_cond|features_filtering: remove_features pixels_cond|column_y: 3 pixels_cond|column_x: 1 pixels_cond|pixel_filtering: two_columns processed_cond|accuracy: 100 features_cond|mz_tabular: featuresofinterest5.tabular features_cond|removal_plusminus: 100 pixels_cond|annotation_file: inputpixels_2column.tabular features_cond|units_removal: ppm infile: features_cond|feature_header: False processed_cond|processed_file: processed |
attributes: name attributes: name |
inputpixels_2column.tabular featuresofinterest5.tabular name |