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Repository revision

Revision: 10:7d10b55965c9

Repository 'neat_genreads'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/thondeboer/neat_genreads

computeFraglen tool metadata

Miscellaneous

Name: computeFraglen

Description: computes empirical fragment length distribution from sample data in BAM format. Creates model file for use in NEAT-genReads

Id: computeFraglen

Guid: toolshed.g2.bx.psu.edu/repos/thondeboer/neat_genreads/computeFraglen/1.0.0

Version: 1.0.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/thondeboer/neat_genreads/computeFraglen/1.0.0 (this tool)

computeFraglen

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

samtools

0.1.19

package

numpy

not provided

package

Functional tests

name

inputs

outputs

required files

Test-1

bam_file: chrMT-PE-VCF-BAM.bam

attributes: name

chrMT-PE-VCF-BAM.bam
name