Repository revision
10:7d10b55965c9

Repository 'neat_genreads'
hg clone https://toolshed.g2.bx.psu.edu/repos/thondeboer/neat_genreads

computeGC tool metadata
Miscellaneous
computeGC
computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads
computeGC
toolshed.g2.bx.psu.edu/repos/thondeboer/neat_genreads/computeGC/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/thondeboer/neat_genreads/computeGC/1.0.0 (this tool)
computeGC
Requirements (dependencies defined in the <requirements> tag set)
name version type
bedtools 2.25.0 package
numpy not provided package
Functional tests
name inputs outputs required files
Test-1 bam_file: chrMT-PE-VCF-BAM.bam
in_type|reference: chrMT.fa
in_type|input_type: history
windowsize: 10
attributes: name
chrMT-PE-VCF-BAM.bam
chrMT.fa
name