Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/thondeboer/neat_genreads/genMutModel/1.0.0 (this tool) |
genMutModel |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
numpy | not provided | package |
matplotlib | not provided | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
in_type|reference: chrMT.fa in_type|input_type: history mutation_file: chrMT-PE-VCF-BAM.vcf |
attributes: name |
chrMT-PE-VCF-BAM.vcf chrMT.fa name |
Test-2 |
misc|include_file: chrMT-Targets.bed in_type|reference: chrMT.fa in_type|input_type: history mutation_file: chrMT-PE-VCF-BAM.vcf |
attributes: name |
chrMT-PE-VCF-BAM.vcf chrMT.fa chrMT-Targets.bed name |
Test-3 |
in_type|reference: chrMT.fa in_type|input_type: history misc|exclude_file: chrMT-Targets.bed mutation_file: chrMT-PE-VCF-BAM.vcf |
attributes: name |
chrMT-PE-VCF-BAM.vcf chrMT.fa chrMT-Targets.bed name |
Test-4 |
mutation_file: chrMT-PE-VCF-BAM.vcf in_type|input_type: history misc|no_whitelist: True misc|skip_common: True in_type|reference: chrMT.fa misc|save_trinuc: True |
attributes: name attributes: name |
chrMT-PE-VCF-BAM.vcf chrMT.fa name |
Test-5 |
in_type|reference: hg19chrmt in_type|input_type: built-in mutation_file: chrMT-PE-VCF-BAM.vcf |
attributes: name |
chrMT-PE-VCF-BAM.vcf name |