| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/iwtomics_loadandplot/iwtomics_loadandplot/1.0.0.0 (this tool) |
| iwtomics_loadandplot |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-iwtomics | 1.0.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
conditionaltype|conditionalscale|alignment: center featuresheader: input/features.header.bed.txt features: ['input/Feature1.bed', 'input/Feature2.bed'] plotres|conditionalplottype|plottype: boxplot regions: ['input/Controls_regions.bed', 'input/Elements1_regions.bed', 'input/Elements2_regions.bed', 'input/Elements3_regions.bed'] zerobased: TRUE plotres|average: True plotres|size: True conditionaltype|kernelbandwidth: 5 plotres|conditionalplottype|probabilitiessection|prob2: 0.75 plotres|conditionalplottype|probabilitiessection|prob1: 0.5 conditionaltype|smoothing: kernel plotres|conditionalplottype|probabilitiessection|prob0: 0.25 regionsheader: input/regions.header.txt conditionaltype|conditionalscale|fillgaps: True |
outrdata: iwtomics.loadandplot.RData outregions: iwtomics.loadandplot.regions.txt outfeatures: iwtomics.loadandplot.features.txt outpdf: iwtomics.loadandplot.pdf |
input/Controls_regions.bed input/Elements1_regions.bed input/Elements2_regions.bed input/Elements3_regions.bed input/regions.header.txt input/Feature1.bed input/Feature2.bed input/features.header.bed.txt output_loadandplot/iwtomics.loadandplot.RData output_loadandplot/iwtomics.loadandplot.regions.txt output_loadandplot/iwtomics.loadandplot.features.txt output_loadandplot/iwtomics.loadandplot.pdf |