| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathchromatogramextractor/OpenSwathChromatogramExtractor/2.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathchromatogramextractor/OpenSwathChromatogramExtractor/2.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathchromatogramextractor/OpenSwathChromatogramExtractor/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathchromatogramextractor/OpenSwathChromatogramExtractor/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathchromatogramextractor/OpenSwathChromatogramExtractor/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathchromatogramextractor/OpenSwathChromatogramExtractor/2.1.0 |
| OpenSwathChromatogramExtractor |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.6 | package |
| openms-thirdparty | 2.6 | package |
| blast | 2.9.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: OpenSwathChromatogramExtractor_input.mzML tr: OpenSwathChromatogramExtractor_input.TraML min_upper_edge_dist: 0.0 rt_window: -1.0 ion_mobility_window: -1.0 mz_window: 0.05 ppm: False is_swath: False extract_MS1: False model|type: linear model|symmetric_regression: False adv_opts_cond|extraction_function: tophat adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathChromatogramExtractor_input.mzML OpenSwathChromatogramExtractor_input.TraML value |
| Test-2 |
in: OpenSwathChromatogramExtractor_input.mzML tr: OpenSwathChromatogramExtractor_input.TraML rt_norm: OpenSwathChromatogramExtractor_input.trafoXML min_upper_edge_dist: 0.0 rt_window: 50.0 ion_mobility_window: -1.0 mz_window: 0.05 ppm: False is_swath: False extract_MS1: False model|type: linear model|symmetric_regression: False adv_opts_cond|extraction_function: tophat adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathChromatogramExtractor_input.mzML OpenSwathChromatogramExtractor_input.TraML OpenSwathChromatogramExtractor_input.trafoXML value |
| Test-3 |
in: OpenSwathChromatogramExtractor_input.mzML tr: OpenSwathChromatogramExtractor_input.TraML min_upper_edge_dist: 0.0 rt_window: -1.0 ion_mobility_window: -1.0 mz_window: 0.05 ppm: False is_swath: False extract_MS1: True model|type: linear model|symmetric_regression: False adv_opts_cond|extraction_function: tophat adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathChromatogramExtractor_input.mzML OpenSwathChromatogramExtractor_input.TraML value |
| Test-4 |
in: OpenSwathChromatogramExtractor_4_input.mzML tr: OpenSwathChromatogramExtractor_4_input.TraML min_upper_edge_dist: 0.0 rt_window: -1.0 ion_mobility_window: 0.05 mz_window: 0.05 ppm: False is_swath: True extract_MS1: False model|type: linear model|symmetric_regression: False adv_opts_cond|extraction_function: tophat adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathChromatogramExtractor_4_input.mzML OpenSwathChromatogramExtractor_4_input.TraML value |
| Test-5 |
in: OpenSwathChromatogramExtractor_input.mzML tr: OpenSwathChromatogramExtractor_5_input.TraML min_upper_edge_dist: 0.0 rt_window: -1.0 ion_mobility_window: -1.0 mz_window: 0.05 ppm: False is_swath: False extract_MS1: True model|type: linear model|symmetric_regression: False adv_opts_cond|extraction_function: tophat adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathChromatogramExtractor_input.mzML OpenSwathChromatogramExtractor_5_input.TraML value |