Repository revision
5:3afa7d456f61

Repository 'hicexplorer_hiccompartmentspolarization'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization

hicCompartmentalization tool metadata
Miscellaneous
compute pairwise correlations between multiple Hi-C contact matrices
hicexplorer_hiccompartmentspolarization
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.4.3.0
3.4.3.0
hicCompartmentalization --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.4.3.0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.3.1.0
hicexplorer_hiccompartmentspolarization
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.4.3 package
Functional tests
name inputs outputs required files
Test-1 matrix_h5_cooler_multiple: hicTransform/obs_exp_norm.h5
pca: hicCompartmentsPolarization/pca1.bedgraph
name: value
hicTransform/obs_exp_norm.h5
hicCompartmentsPolarization/pca1.bedgraph
value
Test-2 matrix_h5_cooler_multiple: hicTransform/obs_exp_norm.h5
pca: hicCompartmentsPolarization/pca1.bedgraph
quantile: 30
name: value
hicTransform/obs_exp_norm.h5
hicCompartmentsPolarization/pca1.bedgraph
value
Test-3 matrix_h5_cooler_multiple: hicTransform/obs_exp_norm.h5
pca: hicCompartmentsPolarization/pca1.bedgraph
outliers: 1.0
name: value
hicTransform/obs_exp_norm.h5
hicCompartmentsPolarization/pca1.bedgraph
value