Repository revision

Revision: 1:c6f32406aa3c

Repository 'hicexplorer_hiccompartmentspolarization'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization

hicCompartmentalization tool metadata

Miscellaneous

Name: hicCompartmentalization

Description: compute pairwise correlations between multiple Hi-C contact matrices

Id: hicexplorer_hiccompartmentspolarization

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.4.1.0

Version: 3.4.1.0

Version command string: hicCompartmentalization --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.4.1.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.3.1.0

hicexplorer_hiccompartmentspolarization

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.4.1

package

Functional tests

name

inputs

outputs

required files

Test-1

pca: hicCompartmentsPolarization/pca1.bedgraph
matrix_h5_cooler_multiple: hicTransform/obs_exp_norm.h5

attributes: name

hicTransform/obs_exp_norm.h5
hicCompartmentsPolarization/pca1.bedgraph
name

Test-2

pca: hicCompartmentsPolarization/pca1.bedgraph
quantile: 30
matrix_h5_cooler_multiple: hicTransform/obs_exp_norm.h5

attributes: name

hicTransform/obs_exp_norm.h5
hicCompartmentsPolarization/pca1.bedgraph
name

Test-3

pca: hicCompartmentsPolarization/pca1.bedgraph
outliers: 1.0
matrix_h5_cooler_multiple: hicTransform/obs_exp_norm.h5

attributes: name

hicTransform/obs_exp_norm.h5
hicCompartmentsPolarization/pca1.bedgraph
name