Repository revision
14:0efbc235f314

Repository 'openms_highresprecursormasscorrector'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector

HighResPrecursorMassCorrector tool metadata
Miscellaneous
Corrects the precursor mass and charge determined by the instrument software.
HighResPrecursorMassCorrector
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.6+galaxy0
2.6+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.8+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.6+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.5+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.2.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.1.0
HighResPrecursorMassCorrector
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.6 package
openms-thirdparty 2.6 package
blast 2.9.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: HighResPrecursorMassCorrector_2860_1103_3.mzML
feature|in: HighResPrecursorMassCorrector_2860_1103_3.featureXML
feature|mz_tolerance: 5.0
feature|mz_tolerance_unit: ppm
feature|rt_tolerance: 0.0
feature|max_trace: 2
feature|believe_charge: False
feature|keep_original: False
feature|assign_all_matching: False
nearest_peak|mz_tolerance: 0.0
nearest_peak|mz_tolerance_unit: ppm
highest_intensity_peak|mz_tolerance: 0.0
highest_intensity_peak|mz_tolerance_unit: ppm
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
HighResPrecursorMassCorrector_2860_1103_3.mzML
HighResPrecursorMassCorrector_2860_1103_3.featureXML
value
Test-2 in: HighResPrecursorMassCorrector_1035_1178_4.mzML
feature|in: HighResPrecursorMassCorrector_1035_1178_4.featureXML
feature|mz_tolerance: 10.0
feature|mz_tolerance_unit: ppm
feature|rt_tolerance: 0.0
feature|max_trace: 4
feature|believe_charge: False
feature|keep_original: False
feature|assign_all_matching: False
nearest_peak|mz_tolerance: 0.0
nearest_peak|mz_tolerance_unit: ppm
highest_intensity_peak|mz_tolerance: 0.0
highest_intensity_peak|mz_tolerance_unit: ppm
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
HighResPrecursorMassCorrector_1035_1178_4.mzML
HighResPrecursorMassCorrector_1035_1178_4.featureXML
value
Test-3 in: HighResPrecursorMassCorrector_2538_1091_2.mzML
feature|in: HighResPrecursorMassCorrector_2538_1091_2.featureXML
feature|mz_tolerance: 5.0
feature|mz_tolerance_unit: ppm
feature|rt_tolerance: 0.0
feature|max_trace: 2
feature|believe_charge: False
feature|keep_original: False
feature|assign_all_matching: False
nearest_peak|mz_tolerance: 0.0
nearest_peak|mz_tolerance_unit: ppm
highest_intensity_peak|mz_tolerance: 0.0
highest_intensity_peak|mz_tolerance_unit: ppm
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
HighResPrecursorMassCorrector_2538_1091_2.mzML
HighResPrecursorMassCorrector_2538_1091_2.featureXML
value
Test-4 in: HighResPrecursorMassCorrector_2810_1091_3.mzML
feature|in: HighResPrecursorMassCorrector_2810_1091_3.featureXML
feature|mz_tolerance: 5.0
feature|mz_tolerance_unit: ppm
feature|rt_tolerance: 0.0
feature|max_trace: 2
feature|believe_charge: False
feature|keep_original: False
feature|assign_all_matching: False
nearest_peak|mz_tolerance: 0.0
nearest_peak|mz_tolerance_unit: ppm
highest_intensity_peak|mz_tolerance: 0.0
highest_intensity_peak|mz_tolerance_unit: ppm
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
HighResPrecursorMassCorrector_2810_1091_3.mzML
HighResPrecursorMassCorrector_2810_1091_3.featureXML
value
Test-5 in: HighResPrecursorMassCorrector_3070_1191_3.mzML
feature|in: HighResPrecursorMassCorrector_3070_1191_3.featureXML
feature|mz_tolerance: 5.0
feature|mz_tolerance_unit: ppm
feature|rt_tolerance: 0.0
feature|max_trace: 2
feature|believe_charge: False
feature|keep_original: False
feature|assign_all_matching: False
nearest_peak|mz_tolerance: 0.0
nearest_peak|mz_tolerance_unit: ppm
highest_intensity_peak|mz_tolerance: 0.0
highest_intensity_peak|mz_tolerance_unit: ppm
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
HighResPrecursorMassCorrector_3070_1191_3.mzML
HighResPrecursorMassCorrector_3070_1191_3.featureXML
value
Test-6 in: HighResPrecursorMassCorrector_6.mzML
feature|mz_tolerance: 5.0
feature|mz_tolerance_unit: ppm
feature|rt_tolerance: 0.0
feature|max_trace: 2
feature|believe_charge: False
feature|keep_original: False
feature|assign_all_matching: False
nearest_peak|mz_tolerance: 0.0
nearest_peak|mz_tolerance_unit: ppm
highest_intensity_peak|mz_tolerance: 0.2
highest_intensity_peak|mz_tolerance_unit: ppm
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
HighResPrecursorMassCorrector_6.mzML
value