Repository revision
18:2fa9d4f1b48f

Repository 'pangolin'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/pangolin

Pangolin tool metadata
Miscellaneous
Pangolin
Phylogenetic Assignment of Outbreak Lineages
pangolin
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.20+galaxy0
3.1.20+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/4.0.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.20+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.19+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.17+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.17+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.16+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.14+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.7+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.0.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/2.3.8+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/2.3.8
pangolin
Requirements (dependencies defined in the <requirements> tag set)
name version type
pangolin 3.1.20 package
scorpio 0.3.16 package
csvtk 0.23.0 package
Functional tests
name inputs outputs required files
Test-1 input1: test1.fasta
db|source: download
name: value
test1.fasta
value
Test-2 input1: test1.fasta
usher: True
db|source: download
name: value
test1.fasta
value
Test-3 input1: test1.fasta
alignment: True
db|source: download
name: value
name: value
test1.fasta
value
Test-4 input1: multiple_alignment.fasta.gz
include_header: True
db|source: download
name: value
multiple_alignment.fasta.gz
value