Repository revision
6:437e28791761

Repository 'pangolin'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/pangolin

Pangolin tool metadata
Miscellaneous
Pangolin
Phylogenetic Assignment of Outbreak Lineages
pangolin
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.4+galaxy1
3.1.4+galaxy1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.7+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.4+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.0.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/2.3.8+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/2.3.8
pangolin
Requirements (dependencies defined in the <requirements> tag set)
name version type
pangolin 3.1.4 package
csvtk 0.22.0 package
Functional tests
name inputs outputs required files
Test-1 input1: test1.fasta
db|source: download
name: value
test1.fasta
value
Test-2 input1: test1.fasta
usher: True
db|source: download
name: value
test1.fasta
value
Test-3 input1: test1.fasta
alignment: True
db|source: download
name: value
name: value
test1.fasta
value
Test-4 input1: multiple_alignment.fasta.gz
include_header: True
db|source: download
name: value
multiple_alignment.fasta.gz
value
Test-5 input1: test1.fasta
db|max_retries: 1
db|timeout: 0.00001
db|source: download
test1.fasta