| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/2.16.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/2.16.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/1.0.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/1.0.0 |
| cummeRbund |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fonts-conda-ecosystem | 1 | package |
| r-argparse | 1.0.4 | package |
| r-base | 3.4.1 | package |
| bioconductor-cummerbund | 2.16.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
plots_0|height: 960 plots_0|width: 1280 plots_0|plot|x: q1 plots_0|plot|y: q2 plots_0|plot|type: maplot input_database: cuffdiff_out.sqlite |
attributes: name |
cuffdiff_out.sqlite name |
| Test-2 |
plots_0|height: 960 plots_0|width: 1280 plots_0|plot|x: q1 plots_0|plot|y: q2 plots_0|plot|type: scatter input_database: cuffdiff_out.sqlite |
attributes: name |
cuffdiff_out.sqlite name |
| Test-3 |
plots_0|width: 1280 plots_0|height: 960 input_database: cuffdiff_out.sqlite plots_0|plot|type: dispersion |
attributes: name |
cuffdiff_out.sqlite name |
| Test-4 |
plots_0|width: 1280 plots_0|height: 960 input_database: cuffdiff_out.sqlite plots_0|plot|type: scatterMatrix |
attributes: name |
cuffdiff_out.sqlite name |
| Test-5 |
plots_0|width: 1280 plots_0|height: 960 input_database: cuffdiff_out.sqlite plots_0|plot|type: pca |
attributes: name |
cuffdiff_out.sqlite name |
| Test-6 |
plots_0|height: 960 plots_0|plot|features: gene plots_0|plot|gene_id: XLOC_000059 plots_0|width: 1280 plots_0|plot|type: expressionplot input_database: cuffdiff_out.sqlite |
attributes: name |
cuffdiff_out.sqlite name |
| Test-7 |
plots_0|height: 960 plots_0|plot|features: gene plots_0|plot|gene_id: XLOC_000039 plots_0|width: 1280 plots_0|plot|type: expressionbarplot input_database: cuffdiff_out.sqlite |
attributes: name |
cuffdiff_out.sqlite name |
| Test-8 |
plots_0|height: 960 plots_0|plot|genes_1|gene_id: XLOC_000037 plots_0|plot|genes_0|gene_id: XLOC_000030 plots_0|width: 1280 plots_0|plot|type: heatmap input_database: cuffdiff_out.sqlite |
attributes: name |
cuffdiff_out.sqlite name |
| Test-9 |
plots_0|width: 1280 plots_0|height: 960 input_database: cuffdiff_out.sqlite plots_0|plot|type: density |
attributes: name |
cuffdiff_out.sqlite name |
| Test-10 |
plots_0|width: 1280 plots_0|height: 960 input_database: cuffdiff_out.sqlite plots_0|plot|type: dendrogram |
attributes: name |
cuffdiff_out.sqlite name |
| Test-11 |
plots_0|height: 960 plots_0|width: 1280 plots_0|plot|x: q1 plots_0|plot|y: q2 plots_0|plot|type: volcano input_database: cuffdiff_out.sqlite |
attributes: name |
cuffdiff_out.sqlite name |
| Test-12 |
plots_0|width: 1280 plots_0|height: 960 input_database: cuffdiff_out.sqlite plots_0|plot|type: boxplot |
attributes: name |
cuffdiff_out.sqlite name |
| Test-13 |
plots_0|width: 1280 plots_0|height: 960 input_database: cuffdiff_out.sqlite plots_0|plot|type: fpkmSCV |
attributes: name |
cuffdiff_out.sqlite name |