| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_oturep/mothur_get_oturep/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_oturep/mothur_get_oturep/1.36.1.0 |
| mothur_get_oturep |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
otu: amazon.an.list method_condition|matrix_condition|dist: 98_sq_phylip_amazon.dist method_condition|matrix_condition|nameOrCount: amazon1.names method_condition|matrix_condition|matrix_format: phylip method_condition|method_switch: distance savelog: True |
name: value |
amazon.an.list 98_sq_phylip_amazon.dist amazon1.names value |
| Test-2 |
otu: amazon.an.list method_condition|matrix_condition|dist: amazon.pair.dist method_condition|matrix_condition|nameOrCount: amazon1.names method_condition|matrix_condition|matrix_format: column method_condition|method_switch: distance label: ['unique', '0.05', '0.27', '0.45'] savelog: True |
name: value |
amazon.an.list amazon.pair.dist amazon1.names value |
| Test-3 |
otu: amazon.an.list method_condition|matrix_condition|dist: 98_sq_phylip_amazon.dist method_condition|matrix_condition|matrix_format: phylip method_condition|fasta: amazon.fasta method_condition|method_switch: distance label: ['0.05', '0.27'] sorted: name savelog: True |
name: value |
amazon.an.list 98_sq_phylip_amazon.dist amazon.fasta value |
| Test-4 |
otu: amazon.an.list method_condition|matrix_condition|dist: amazon.pair.dist method_condition|matrix_condition|nameOrCount: amazon1.names method_condition|matrix_condition|matrix_format: column method_condition|pick|group: amazon.groups method_condition|pick|groups: ['forest', 'pasture'] method_condition|pick|type: yes method_condition|method_switch: distance label: ['unique', '0.05', '0.27', '0.45'] savelog: True |
name: value |
amazon.an.list amazon.pair.dist amazon1.names amazon.groups value |
| Test-5 |
otu: amazon.an.list method_condition|matrix_condition|dist: 98_sq_phylip_amazon.dist method_condition|matrix_condition|nameOrCount: amazon1.count_table method_condition|matrix_condition|matrix_format: phylip method_condition|method_switch: distance label: ['unique', '0.05', '0.27'] savelog: True |
name: value |
amazon.an.list 98_sq_phylip_amazon.dist amazon1.count_table value |
| Test-6 |
otu: amazon.an.list method_condition|nameOrCount: amazon1.count_table method_condition|method_switch: abundance label: ['0.27', 'unique'] sorted: name savelog: True |
name: value |
amazon.an.list amazon1.count_table value |