Repository revision
13:27e308170367

Repository 'openms_mascotadapter'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter

MascotAdapter tool metadata
Miscellaneous
Annotates MS/MS spectra using Mascot.
MascotAdapter
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.8+galaxy0
2.8+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.8+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.5+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.2.0.1
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.1.0
MascotAdapter
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.8 package
openms-thirdparty 2.8 package
omssa 2.1.9 package
blast 2.13.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: MascotAdapter_1_input.mzData
out_type: mgf
instrument: ESI-TRAP
precursor_mass_tolerance: 1.3
peak_mass_tolerance: 0.3
taxonomy: . . . . . . Chordata (vertebrates and relatives)
modifications: "Carboxymethyl (C)"
variable_modifications: "Variable_Modifications_TEST_1"
charges: "1+" "2+" "3+"
db: MSDB
hits: AUTO
cleavage: Trypsin
missed_cleavages: 1
sig_threshold: 0.05
pep_homol: 1.0
pep_ident: 1.0
pep_rank: 1
prot_score: 1.0
pep_score: 1.0
pep_exp_z: 1
show_unassigned: 1
first_dim_rt: 0.0
boundary: ABCDEFGHIJKMNOPQRSTUVWXYZ
mass_type: Monoisotopic
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
MascotAdapter_1_input.mzData
value
Test-2 in: MascotAdapter_2_input.mascotXML
out_type: idXML
instrument: Default
precursor_mass_tolerance: 2.0
peak_mass_tolerance: 1.0
taxonomy: All entries
modifications:
variable_modifications:
charges: "1+" "2+" "3+"
db: MSDB
hits: AUTO
cleavage: Trypsin
missed_cleavages: 0
sig_threshold: 0.05
pep_homol: 1.0
pep_ident: 1.0
pep_rank: 1
prot_score: 1.0
pep_score: 1.0
pep_exp_z: 1
show_unassigned: 1
first_dim_rt: 0.0
boundary:
mass_type: Monoisotopic
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
MascotAdapter_2_input.mascotXML
value