| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/3.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.8+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.2.0.1 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapter/MascotAdapter/2.1.0 |
| MascotAdapter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.8 | package |
| openms-thirdparty | 2.8 | package |
| omssa | 2.1.9 | package |
| blast | 2.13.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: MascotAdapter_1_input.mzData out_type: mgf instrument: ESI-TRAP precursor_mass_tolerance: 1.3 peak_mass_tolerance: 0.3 taxonomy: . . . . . . Chordata (vertebrates and relatives) modifications: "Carboxymethyl (C)" variable_modifications: "Variable_Modifications_TEST_1" charges: "1+" "2+" "3+" db: MSDB hits: AUTO cleavage: Trypsin missed_cleavages: 1 sig_threshold: 0.05 pep_homol: 1.0 pep_ident: 1.0 pep_rank: 1 prot_score: 1.0 pep_score: 1.0 pep_exp_z: 1 show_unassigned: 1 first_dim_rt: 0.0 boundary: ABCDEFGHIJKMNOPQRSTUVWXYZ mass_type: Monoisotopic adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
MascotAdapter_1_input.mzData value |
| Test-2 |
in: MascotAdapter_2_input.mascotXML out_type: idXML instrument: Default precursor_mass_tolerance: 2.0 peak_mass_tolerance: 1.0 taxonomy: All entries modifications: variable_modifications: charges: "1+" "2+" "3+" db: MSDB hits: AUTO cleavage: Trypsin missed_cleavages: 0 sig_threshold: 0.05 pep_homol: 1.0 pep_ident: 1.0 pep_rank: 1 prot_score: 1.0 pep_score: 1.0 pep_exp_z: 1 show_unassigned: 1 first_dim_rt: 0.0 boundary: mass_type: Monoisotopic adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
MascotAdapter_2_input.mascotXML value |