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hicCompareMatrices tool metadata

Miscellaneous

Name: hicCompareMatrices

Description: normalize and compare two Hi-C contact matrices

Id: hicexplorer_hiccomparematrices

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.7.5+galaxy0

Version: 3.7.5+galaxy0

Version command string: hicCompareMatrices --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.7.5+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.7.2+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.6+galaxy1

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.6+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.4.3.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.3.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/2.1.4.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/2.1.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/2.1.0

hicexplorer_hiccomparematrices

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.7.5

package

Additional information about this tool

Command:

ln -s '$matrix1' 'matrix1.$matrix1.ext' &&
    ln -s '$matrix2' 'matrix2.$matrix2.ext' &&

    hicCompareMatrices
    --matrices 'matrix1.$matrix1.ext' 'matrix2.$matrix2.ext'
    --operation $operation
    --outFileName 'matrix.$matrix1.ext'
    $noNorm
    && mv 'matrix.$matrix1.ext' matrix

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

matrix1: small_test_matrix.h5
matrix2: small_test_matrix.h5
operation: log2ratio

name: value

small_test_matrix.h5
value