Revision: 4:1c9b3bcd4261

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable

Miscellaneous

Name: dada2: makeSequenceTable

Description: construct a sequence table (analogous to OTU table)

Id: dada2_makeSequenceTable

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.18+galaxy0

Version: 1.18+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.20+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.18+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.16+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.12+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.12+galaxy0

dada2_makeSequenceTable

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
bioconductor-dada2	1.18	package

Functional tests

name	inputs	outputs	required files
Test-1	samples: ['mergePairs_F3D0_S188_L001.Rdata', 'mergePairs_F3D141_S207_L001.Rdata']	name: value name: value	mergePairs_F3D0_S188_L001.Rdata mergePairs_F3D141_S207_L001.Rdata value
Test-2	samples: ['mergePairs_F3D0_S188_L001.Rdata', 'mergePairs_F3D141_S207_L001.Rdata'] filter_cond|min: 200 filter_cond|max: 300 filter_cond|filter_select: minmax plot: False	name: value	mergePairs_F3D0_S188_L001.Rdata mergePairs_F3D141_S207_L001.Rdata value