dada2: makeSequenceTable tool metadata

Miscellaneous

Name: dada2: makeSequenceTable

Description: construct a sequence table (analogous to OTU table)

Id: dada2_makeSequenceTable

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.34.0+galaxy0

Version: 1.34.0+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.34.0+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.34.0+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.30.0+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.28+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.28+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.20+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.20+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.18+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.16+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.12+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_makesequencetable/dada2_makeSequenceTable/1.12+galaxy0

dada2_makeSequenceTable

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

bioconductor-dada2

1.34.0

package

Additional information about this tool

Command:

Rscript '$dada2_script'

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

samples: ['mergePairs_F3D0_S188_L001.Rdata', 'mergePairs_F3D141_S207_L001.Rdata']

name: value
name: value

mergePairs_F3D0_S188_L001.Rdata
mergePairs_F3D141_S207_L001.Rdata
value

Test-2

samples: ['mergePairs_F3D0_S188_L001.Rdata', 'mergePairs_F3D141_S207_L001.Rdata']
filter_cond|min: 200
filter_cond|max: 300
filter_cond|filter_select: minmax
plot: False

name: value

mergePairs_F3D0_S188_L001.Rdata
mergePairs_F3D141_S207_L001.Rdata
value